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| Zeni JO, Hoeinghaus DJ, Roa-Fuentes CA, Casatti L. Stochastic species loss and dispersal limitation drive patterns of spatial and temporal beta diversity of fish assemblages in tropical agroecosystem streams. In review. |
| Lima Junior DP, Bellay S, Hoeinghaus DJ, Bini LM, Lima LB, Yotoko K, Agostinho AA. Host phylogeny, abundance and local environmental factors drive infection patterns of a parasite in diverse floodplain fish assemblages. In review. |
| Possamai B, Hoeinghaus DJ, Odebrecht C, Abreu PC, Moraes LE, Santos ACA, Garcia AM. 2020. Seasonality and freshwater inflows affect allochthonous source assimilation by estuarine fishes. Estuaries and Coasts, In press |
| Harried BL, Daugherty DJ, Hoeinghaus DJ, Roberts AP, Venables BJ, Sutton TM, Soulen BK. 2019. Population contributions of large females may be eroded by contaminant body burden and maternal transfer: a case study of Alligator Gar. North American Journal of Fisheries Management, DOI: 10.1002/nafm.10382 |
| Arantes CC, Fitzgerald DB, Hoeinghaus DJ, Winemiller KO. 2019. Impacts of hydroelectric dams on fishes and fisheries in tropical rivers through the lens of functional traits. Current Opinion in Environmental Sustainability 37: 28-40. |
| Montag LFA, Winemiller KO, Keppeler FW, Leão H, Benone NL, Torres NR, Prudente BS, Begot TO, Bower LM, Saenz DE, Lopez-Delgado EO, Morales YQ, Hoeinghaus DJ, Juen L. 2019. Land cover, riparian zones, and instream habitat influence stream fish assemblages in the eastern Amazon. Ecology of Freshwater Fish 28: 317-329. |
| Alves GHZ, Tófoli RM, Message HJ, Lima Junior DP, Hoeinghaus DJ. 2018. New decree promotes fish invasion in the Amazon and Pantanal. Biodiversity and Conservation 27: 2449–2450. |
| Alves dos Santos D, Hoeinghaus DJ, Gomes LC. 2018. Spatial scales and the invasion paradox: a test using fish assemblages in a Neotropical floodplain. Hydrobiologia 817: 121-131. |
| Dodds WK, Higgs SA, Spangler MJ, Scott JD, Hedden SC, Frenette BD, Taylor R, Schechner AE, Hoeinghaus DJ, Evans-White MA. 2018. Spatial heterogeneity and controls of ecosystem metabolism in a Great Plains river network. Hydrobiologia 813: 85-102. |
| Brejão GL, Hoeinghaus DJ, Pérez-Mayorga MA, Ferraz SFB, Casatti L. 2018. Threshold responses of Amazonian stream fishes to timing and extent of deforestation. Conservation Biology 32: 860-871. |
| Hoeinghaus DJ. 2018. Dams and River Fragmentation. in D.A. DellaSala and M.I. Goldstein (Editors), The Encyclopedia of the Anthropocene, vol. 3 (Biodiversity), p. 241-248. Elsevier, Oxford, UK. (also included in the Reference Module in Earth Systems and Environmental Science) |
| Zeni JO, Hoeinghaus DJ, Casatti L. 2017. Effects of pasture conversion to sugarcane for biofuels production on stream fish assemblages in tropical agroecosystems. Freshwater Biology 62: 2026-2038. |
| Tófoli RM, Dias RM, Alves GHZ, Hoeinghaus DJ, Gomes LC, Baumgartner MT, Agostinho AA. 2017. Gold at what cost? Another megaproject threatens biodiversity in the Amazon. Perspectives in Ecology and Conservation 15: 129-131. |
| Churchill CJ, Hoeinghaus DJ, La Point TW. 2017. Environmental conditions increase growth rates and mortality of zebra mussels (Dreissena polymorpha) along the southern invasion front in North America. Biological Invasions 19: 2355-2373. |
| Alves GHZ, Hoeinghaus DJ, Manetta GI, Benedito E. 2017. Dry season limnological conditions and basin geology exhibit complex relationships with δ13C and δ15N of basal carbon sources in four Neotropical floodplains. PLoS ONE 12: e0174499. |
| Garcia AM, Winemiller KO, Hoeinghaus DJ, Claudino M, Bastos R, Correa F, Huckembeck S, Vieira JP, Loebmann D, Abreu P, Ducatti C. 2017. Hydrologic pulsing promotes connectivity and food web subsidies in a subtropical coastal ecosystem. Marine Ecology Progress Series 567: 17-28 |
| Condini MV, Hoeinghaus DJ, Roberts AP, Soulen BK, Garcia AM. 2017. Mercury concentrations in dusky grouper Epinephelus marginatus in littoral and neritic habitats along the Southern Brazilian coast. Marine Pollution Bulletin 115: 266-272. |
| Vitule JRS, Agostinho AA, Azevedo-Santos VM, Daga VS, Darwall WRT, Fitzgerald DB, Frehse FA, Hoeinghaus DJ, Lima Jr. DP, Magalhães ALB, Orsi ML, Padial AA, Pelicice FM, Petrere Jr. M, Pompeu PS, Winemiller KO. 2017. We need better understanding about functional diversity and vulnerability of tropical freshwater fishes. Biodiversity and Conservation 26: 757-762. |
| Ribolli J, Hoeinghaus DJ, Johnson JA, Zaniboni-Filho E, Freitas PD, Galetti Jr. PM. 2017. Isolation-by-time population structure in potamodromous Dourado Salminus brasiliensis in southern Brazil. Conservation Genetics 18: 67-76. |
| Driver LJ, Hoeinghaus DJ. 2016. Fish metacommunity responses to experimental drought are determined by habitat heterogeneity and connectivity. Freshwater Biology 61: 533-548. |
Winemiller KO, McIntyre PB, Castello L, Fluet-Chouinard E, Giarrizzo T, Nam S, Baird IG, Darwall W, Lujan NK, Harrison I, Stiassny MLJ, Silvano RAM, Fitzgerald DB, Pelicice FM, Agostinho AA, Gomes LC, Albert JS, Petrere Jr. M, Zarfl C, Mulligan M, Sullivan JP, Arantes C, Sousa LM, Koning AA, Hoeinghaus DJ, Sabaj M, Lundberg JG, Armbruster J, Petry P, Zuanon J, Torrente Vilara G, Snoeks J, Ou C, Pavanelli CS, Akama A, van Soesbergen A, Sáenz L. 2016. Balancing hydropower and biodiversity in the Amazon, Congo and Mekong – basin-scale planning is needed to minimize impacts in mega-diverse rivers. Science 351: 128-129. |
| Driver LJ, Hoeinghaus DJ. 2016. Spatiotemporal dynamics of intermittent stream fish metacommunities in response to prolonged drought and reconnectivity. Marine and Freshwater Research 67: 1667-1679. |
| Lima Junior DP, Hoeinghaus DJ, Bini LM, Agostinho AA. 2015. Are non-native species larger in invaded ranges? A test with tropical floodplain fish assemblages following inundation of a biogeographic barrier. Biological Invasions 17: 3263-3274. |
| Pendleton RM, Hoeinghaus DJ, Gomes LC, Agostinho AA. 2015. Trophic downgrading results in complex ecosystem dynamics in experimental tropical floodplain food webs. Hydrobiologia 760: 15-28. |
| Condini MV, Hoeinghaus DJ, Garcia AM. 2015. Trophic ecology of dusky grouper Epinephelus marginatus (Actinopterygii, Epinephelidae) in littoral and neritic habitats of southern Brazil as elucidated by stomach contents and stable isotope analyses. Hydrobiologia 743: 109-125. |
| Pendleton RM, Hoeinghaus DJ, Gomes LC, Agostinho AA. 2014. Loss of rare fish species from tropical floodplain food webs affects community structure and ecosystem multifunctionality in a mesocosm experiment. PLoS ONE 9(1): e84568. |
Fry M, Hoeinghaus DJ, Ponette-González AG, Thompson R, La Point TW. 2012. Fracking vs. faucets: balancing energy needs and water sustainability at urban frontiers. Environmental Science and Technology 46: 7444-7445. |
| Hoeinghaus DJ, Vieira JP, Costa CS, Bemvenuti CE, Winemiller KO, Garcia AM. 2011. Hydrogeomorphic characteristics affect the relative importance of carbon sources supporting estuarine consumers within and among ecological guilds. Hydrobiologia 673: 79-92. |
| Winemiller KO, Hoeinghaus DJ, Pease AA, Esselman PC, Honeycutt RL, Gbanaador D, Carrera E, Payne J. 2011. Stable isotope analysis reveals food web structure and watershed impacts along the fluvial gradient of a Mesoamerican coastal river. River Research and Applications 27: 791-803. |
| Hoeinghaus DJ, Pelicice FM. 2010. Lethal and non-lethal effects of predators on stream fish species and assemblages: a synthesis of predation experiments. Pgs. 619-648 in K.B. Gido and D.A. Jackson, eds., Community Ecology of Stream Fishes, American Fisheries Society Symposium 73. |
| Mendoza-Carranza M, Hoeinghaus DJ, Garcia AM, Romero-Rodriguez A. 2010. Aquatic food webs in mangrove and seagrass habitats of Centla Wetland, a Biosphere Reserve in southeastern México. Neotropical Ichthyology 8: 171-178. |
| Winemiller KO, Flecker AS, Hoeinghaus DJ. 2010. Patch dynamics and environmental heterogeneity in lotic ecosystems. Journal of the North American Benthological Society 29: 84-99. |
| Hoeinghaus DJ, Agostinho AA, Gomes LC, Pelicice FM, Okada EK, Latini JD, Kashiwaqui EAL, Winemiller KO. 2009. Effects of river impoundment on ecosystem services of large tropical rivers: embodied energy and market value of artisanal fisheries. Conservation Biology 23: 1222-1231. |
| Hoeinghaus DJ, Zeug SC. 2008. Can stable isotope ratios provide for community-wide measures of trophic structure?: Comment. Ecology 89: 2353-2357. |
| Hoeinghaus DJ, Winemiller KO, Agostinho AA. 2008. Hydrogeomorphology and river impoundment affect food-chain length in diverse Neotropical food webs. Oikos 117: 984-995. |
| Hoeinghaus DJ, Winemiller KO, Agostinho AA. 2007. Landscape-scale hydrologic characteristics differentiate patterns of carbon flow in large-river food webs. Ecosystems 10: 1019-1033. |
| Garcia AM, Hoeinghaus DJ, Vieira JP, Winemiller KO. 2007. Isotopic variation of fishes in freshwater and estuarine zones of a large subtropical coastal lagoon. Estuarine Coastal and Shelf Science 73: 399-408. |
| Hoeinghaus DJ, Davis SE. 2007. Size-based trophic shifts of saltmarsh dwelling blue crabs elucidated by dual stable C and N isotope analyses. Marine Ecology Progress Series 334: 199-204. |
| Zeug SC, Shervette VR, Hoeinghaus DJ, Davis SE. 2007. Nekton assemblage structure in created and natural marsh-edge habitats of the Guadalupe Estuary, Texas. Estuarine Coastal and Shelf Science 71: 457-466. |
| Hoeinghaus DJ, Winemiller KO, Birnbaum JS. 2007. Local and regional determinants of stream fish assemblage structure: inferences based on taxonomic vs. functional groups. Journal of Biogeography 34: 324-338. |
| Hoeinghaus DJ, Winemiller KO, Layman CA, Arrington DA, Jepsen DB. 2006. Effects of seasonality and migratory prey on body condition of Cichla species in a tropical floodplain river. Ecology of Freshwater Fish 15: 398-407. |
| Garcia AM, Hoeinghaus DJ, Vieira JP, Winemiller KO, Motta Marques DML, Bemvenuti MA. 2006. Preliminary examination of food web structure of Nicola Lake (Taim Hydrological System, south Brazil) using dual C and N stable isotope analyses. Neotropical Ichthyology 4: 279-284. |
| Hoeinghaus DJ, Winemiller KO, Taphorn DC. 2004. Compositional change in fish assemblages along the Andean piedmont – Llanos floodplain gradient of the Portuguesa River, Venezuela. Neotropical Ichthyology 2: 85-92. |
| Hoeinghaus DJ, Layman CA, Arrington DA, Winemiller KO. 2003. Movement of Cichla species (Cichlidae) in a Venezuelan floodplain river. Neotropical Ichthyology 1: 121-126. |
| Hoeinghaus DJ, Layman CA, Arrington DA, Winemiller KO. 2003. Spatiotemporal variation in fish assemblage structure in tropical floodplain creeks. Environmental Biology of Fishes 67: 379-387. |
